PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0001s0020.5.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family Trihelix
Protein Properties Length: 435aa    MW: 49301.4 Da    PI: 7.9386
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0001s0020.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix56.28.8e-1847123171
             trihelix   1 rWtkqevlaLiearremeerlr......rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71 
                          rW+++e+l+L++a+++ +e+l+      r+  +  +We v++++++ g+er++ qC+++w  l ++ykk+ke++++ 
  Mapoly0001s0020.5.p  47 RWSQHETLVLVAAKKRQGEELSpaiprpRNLTADERWELVAAYCKANGCERNAYQCRKRWFALYGDYKKVKEWQRSS 123
                          8********************9444433346899****************************************985 PP

2trihelix51.23.4e-16217295172
             trihelix   1 rWtkqevlaLiearremeerlrrgk.......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt 72 
                          rW+ +e l L++a+++ e++++ +        ++  +We++s+++r  g+er++ qC+++w+ l +++k+i+e++k  t
  Mapoly0001s0020.5.p 217 RWSLHESLILLAAKKKQEDDSGMAPkarartvSADERWESISAHCRTNGCERNAYQCRKRWSALLGDFKRIREWQKLST 295
                          8**************9999999543344555699*****************************************9853 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.22440110IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.9E-443111IPR009057Homeodomain-like
SMARTSM007170.1544112IPR001005SANT/Myb domain
PfamPF138374.0E-1246126No hitNo description
PROSITE profilePS500907.155210281IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.7E-4211281IPR009057Homeodomain-like
SMARTSM007170.34214283IPR001005SANT/Myb domain
PfamPF138371.9E-8216296No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MMDEFRMSFF MEAGGEVVGD LGVDGEPVAV PIEQVDESAE RQNRNPRWSQ HETLVLVAAK  60
KRQGEELSPA IPRPRNLTAD ERWELVAAYC KANGCERNAY QCRKRWFALY GDYKKVKEWQ  120
RSSAETYWGM KNDRRRENRL PGTFDRVVFQ SMDSWLKISS DAQFDTPTRP DEGISSEIEQ  180
DVEGQELPDI ARGDGNSIVP RSEQTGDLGD KRYRNPRWSL HESLILLAAK KKQEDDSGMA  240
PKARARTVSA DERWESISAH CRTNGCERNA YQCRKRWSAL LGDFKRIREW QKLSTESYWL  300
MKNEKRKENK LPAIFDYEVF VNMDSWVGKR TGKKSGAAPE FLDCARPANG RLFPDVEHDR  360
EGHLEPVPLI GGCQRNTTLA PEMALARKEG NEAVFVVEIP SLGLESSKPG KVPSLSHQGC  420
SVSRRPNTTG GNAK*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.12e-27Trihelix family protein